DNA Binding Motif

						

			
Accessions: RFX3_SRF (HumanTF2 1.0)

			
Names: RFX3_SRF
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 23
Consensus: trGcAACswykaCCwwatawGGt
Weblogo: 
PSSM: P0      A      C      G      T
01    210    239    174    839      t
02    675    148    787     11      r
03    325     36   1462      0      G
04    301   1156     41    306      c
05   1462     71    276    304      A
06   1462     44     69     41      A
07      4   1462     16    154      C
08    280    452    549    181      s
09    535    362    168    397      w
10    342    382    198    539      y
11    293    178    387    604      k
12    467    356    339    300      a
13     87   1462    143     14      C
14     88   1462     16    154      C
15   1288    345    817   1462      w
16    575    216     28    887      w
17   1060    169    198    402      a
18    353    184    152   1109      t
19    887     70    143    362      a
20    496    317    158    491      w
21    267      0   1462     24      G
22     55    134   1462    146      G
23    364    284    291    523      t
Type: Heterodimer
Binding TFs: RFX3_TF1 (RFX DNA-binding domain)
SRF_TF1 / SRF_TF2 (SRF-type transcription factor (DNA-binding and dimerisation domain))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.