DNA Binding Motif

						

			
Accessions: MA1886.1 (JASPAR 2024)

			
Names: Hox5
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwrtTAATTGsttwtww
Weblogo: 
PSSM: P0      A      C      G      T
01    296    199    233    272      w
02    278    199    235    289      w
03    288    203    244    265      w
04    290    210    242    258      w
05    258    242    236    265      w
06    274    224    287    215      r
07    245    214    233    308      t
08     42     29     19    910      T
09    874     25     41     60      A
10    944     11     16     28      A
11     51     20     35    894      T
12     56     53    108    783      T
13    171     37    723     70      G
14    224    271    265    241      s
15    215    242    249    295      t
16    248    225    233    294      t
17    254    211    212    323      w
18    243    204    221    331      t
19    252    202    218    328      w
20    263    199    217    321      w
Type: Heterodimer
Binding TFs: Q4H3C5 (Homeobox domain)
Q4H3C5
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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