DNA Binding Motif

						

			
Accessions: 5yi3_MN (3D-footprint 20231221)

			
Names: Zinc transport transcriptional regulator
Organisms: Lactococcus lactis, Lactococcus lactis subsp. lactis (strain IL1403)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Lactococcus lactis ZitR, C30S mutant in complex with DNA
Length: 12
Consensus: TTAACTnGTTaA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0      0     96      T
03     75     10      3      8      A
04     96      0      0      0      A
05      0     96      0      0      C
06     10      6     10     70      T
07     24     24     24     24      n
08      8     10     68     10      G
09      0      0      0     96      T
10      8     10     10     68      T
11     58     12     13     13      a
12     96      0      0      0      A
Binding TFs: 5yi3_M / 5yi3_N (Bacterial regulatory protein, arsR family, MarR family, Iron dependent repressor, N-terminal DNA binding domain, TFIIE alpha subunit, Transcriptional regulator, MarR family, Winged helix-turn-helix DNA-binding, Winged helix DNA-binding domain)
Binding Sites: 5yi3_O / 5yi3_P
			
Publications: Zhu R, Song Y, Liu H, Yang Y, Wang S, Yi C, Chen PR. Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation. Proc Natl Acad Sci U S A 114:13661-13666 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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