DNA Binding Motif
| Accessions: | MA0265.2 (JASPAR 2024) |
| Names: | ABF1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-exo |
| Length: | 20 |
| Consensus: | wtttCGTatawARTGAyatw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 123 71 77 156 w 02 104 86 70 167 t 03 101 66 60 200 t 04 69 72 10 276 t 05 5 421 1 0 C 06 4 0 418 5 G 07 5 0 3 419 T 08 188 66 95 78 a 09 87 91 65 184 t 10 228 38 72 89 a 11 155 48 64 160 w 12 291 48 54 34 A 13 126 1 297 3 R 14 4 41 6 376 T 15 1 2 420 4 G 16 419 3 1 4 A 17 3 169 15 240 y 18 229 52 67 79 a 19 106 92 78 151 t 20 141 57 88 141 w |
| Type: | Heterodimer |
| Binding TFs: | P14164 (BAF1 / ABF1 chromatin reorganising factor) P14164 |
| Binding Sites: | MA0265.2.1 MA0265.2.10 / MA0265.2.12 MA0265.2.11 / MA0265.2.13 MA0265.2.12 / MA0265.2.14 MA0265.2.13 / MA0265.2.15 MA0265.2.14 / MA0265.2.18 MA0265.2.15 / MA0265.2.19 MA0265.2.16 / MA0265.2.20 MA0265.2.17 MA0265.2.18 MA0265.2.19 MA0265.2.2 / MA0265.2.3 MA0265.2.20 MA0265.2.3 / MA0265.2.5 MA0265.2.4 MA0265.2.5 / MA0265.2.6 MA0265.2.6 / MA0265.2.8 MA0265.2.7 / MA0265.2.9 MA0265.2.10 / MA0265.2.8 MA0265.2.11 / MA0265.2.9 MA0265.2.16 MA0265.2.17 MA0265.2.2 MA0265.2.4 MA0265.2.7 |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
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