DNA Binding Motif

						

			
Accessions: RORB_methyl_1 (HT-SELEX2 May2017)

			
Names: RORB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: dAwgTrGGTyAGTRGGTCRc
Weblogo: 
PSSM: P0      A      C      G      T
01   6338   2183   5917   8142      d
02  20989   1049    966   2676      A
03  12642    217    640   9735      w
04   2764   4842  10178   4797      g
05    545   1706   4444  20087      T
06  13638     46   8914      4      r
07     31      5  22307    636      G
08     41     16  22529     52      G
09     31    587   2223  21139      T
10    244  16969      5  13393      y
11  22523      5    168    143      A
12   1773   3248  16230   1328      G
13    241    966   1328  21889      T
14  15501     33   7067     42      R
15     34     35  22360    841      G
16    103     68  22567    105      G
17    898    998   2069  21539      T
18     47  22359    144    829      C
19  20481     13   6890     78      R
20   5229   6652   5529   5169      c
Binding TFs: RORB (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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