DNA Binding Motif
| Accessions: | MA1818.1 (JASPAR 2024) |
| Names: | Zm00001d052229 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 10 |
| Consensus: | cgCCGCCGcc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 975 4801 2029 1151 c 02 1193 1587 5207 969 g 03 0 8956 0 0 C 04 0 8956 0 0 C 05 0 0 8956 0 G 06 0 8956 0 0 C 07 0 8956 0 0 C 08 0 0 8956 0 G 09 977 5049 1720 1210 c 10 920 5142 1908 986 c |
| Type: | Heterodimer |
| Binding TFs: | C4JBG6 (AP2 domain) C4JBG6 |
| Binding Sites: | MA1818.1.1 MA1818.1.10 / MA1818.1.9 MA1818.1.10 / MA1818.1.11 MA1818.1.11 / MA1818.1.12 / MA1818.1.17 / MA1818.1.18 MA1818.1.12 / MA1818.1.13 MA1818.1.13 / MA1818.1.14 MA1818.1.14 / MA1818.1.15 MA1818.1.15 / MA1818.1.16 MA1818.1.16 / MA1818.1.17 MA1818.1.18 / MA1818.1.19 MA1818.1.1 / MA1818.1.2 MA1818.1.19 / MA1818.1.20 MA1818.1.2 / MA1818.1.3 MA1818.1.3 / MA1818.1.4 MA1818.1.4 / MA1818.1.5 MA1818.1.5 / MA1818.1.6 MA1818.1.6 / MA1818.1.7 MA1818.1.7 / MA1818.1.8 MA1818.1.8 / MA1818.1.9 MA1818.1.20 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.