DNA Binding Motif

						

			
Accessions: MA1679.2 (JASPAR 2024)

			
Names: RAP2-1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 8
Consensus: CACCGACA
Weblogo: 
PSSM: P0      A      C      G      T
01     46    810     17     26      C
02    810      2     78      9      A
03      4    890      3      2      C
04      5    890      0      4      C
05      5      2    890      2      G
06    738    106     10     45      A
07      2    892      1      4      C
08    739     67     44     49      A
Type: Heterodimer
Binding TFs: Q8LC30 (AP2 domain)
Q8LC30
Binding Sites: MA1679.2.1 / MA1679.2.12 / MA1679.2.13 / MA1679.2.14 / MA1679.2.15 / MA1679.2.16 / MA1679.2.17 / MA1679.2.4
MA1679.2.2 / MA1679.2.3
MA1679.2.5
MA1679.2.6 / MA1679.2.7 / MA1679.2.9
MA1679.2.8
MA1679.2.10
MA1679.2.11 / MA1679.2.18 / MA1679.2.19 / MA1679.2.20
			
Publications: Dong CJ, Liu JY. The Arabidopsis EAR-motif-containing protein RAP2. 1 functions as an active transcriptional repressor to keep stress responses under tight control : (BMC). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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