DNA Binding Motif
| Accessions: | MA1076.2 (JASPAR 2024) |
| Names: | WRKY15 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 16 |
| Consensus: | wwwwwrGTCAACGdtw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 403 201 271 365 w 02 395 254 197 394 w 03 426 250 201 363 w 04 489 192 175 384 w 05 521 127 163 429 w 06 583 58 515 84 r 07 15 7 1210 8 G 08 2 8 3 1227 T 09 9 1222 2 7 C 10 1221 8 4 7 A 11 1218 3 11 8 A 12 65 1088 8 79 C 13 100 88 893 159 G 14 330 246 338 326 d 15 309 305 189 437 t 16 350 182 296 412 w |
| Type: | Heterodimer |
| Binding TFs: | O22176 (WRKY DNA -binding domain, Plant zinc cluster domain) O22176 |
| Binding Sites: | MA1076.2.1 MA1076.2.10 MA1076.2.11 MA1076.2.12 MA1076.2.13 / MA1076.2.7 MA1076.2.14 / MA1076.2.8 MA1076.2.15 / MA1076.2.9 MA1076.2.16 MA1076.2.17 MA1076.2.18 MA1076.2.10 / MA1076.2.19 MA1076.2.2 MA1076.2.20 MA1076.2.2 / MA1076.2.3 MA1076.2.4 MA1076.2.5 MA1076.2.3 / MA1076.2.6 MA1076.2.4 / MA1076.2.7 MA1076.2.5 / MA1076.2.8 MA1076.2.6 / MA1076.2.9 MA1076.2.11 MA1076.2.12 MA1076.2.13 MA1076.2.14 MA1076.2.15 MA1076.2.16 MA1076.2.17 MA1076.2.18 MA1076.2.19 MA1076.2.20 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.