DNA Binding Motif

						

			
Accessions: MA1699.1 (JASPAR 2024)

			
Names: ceh-38
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 16
Consensus: mrAAAAATCrATAAwt
Weblogo: 
PSSM: P0      A      C      G      T
01    734    547    400    496      m
02    992    250    669    266      r
03   1760     34    272    111      A
04   2025     16     20    116      A
05   2060     34      9     74      A
06   2156      4      6     11      A
07   2135      8     25      9      A
08     11     17      3   2146      T
09     11   2152      3     11      C
10   1011     11   1133     22      r
11   2150      6     13      8      A
12     15      9      3   2150      T
13   2109     24     22     22      A
14   1936     59     41    141      A
15    888    115     50   1124      w
16    444    208    102   1423      t
Type: Heterodimer
Binding TFs: Q19720 (Homeobox domain, CUT domain)
Q19720
Binding Sites: MA1699.1.1
MA1699.1.10
MA1699.1.11
MA1699.1.12
MA1699.1.13
MA1699.1.14
MA1699.1.15
MA1699.1.16
MA1699.1.17
MA1699.1.18
MA1699.1.19
MA1699.1.2
MA1699.1.20
MA1699.1.3
MA1699.1.4
MA1699.1.5
MA1699.1.6
MA1699.1.7
MA1699.1.8
MA1699.1.9
			
Publications: Lannoy V. J., Burglin T. R., Rousseau G. G., Lemaigre F. P. Isoforms of hepatocyte nuclear factor-6 differ in DNA-binding properties, contain a bifunctional homeodomain, and define the new ONECUT class of homeodomain proteins. J. Biol. Chem. 273:13552-13562 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.