DNA Binding Motif

						

			
Accessions: 6ryl_ABC (3D-footprint 20231221)

			
Names: Protein WUSCHEL
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: WUS-HD bound to TAAT DNA
Length: 14
Consensus: CAACAcnTTAACnA
Weblogo: 
PSSM: P0      A      C      G      T
01      8     76      8      4      C
02     76      8      4      8      A
03     96      0      0      0      A
04      8     72     12      4      C
05     92      4      0      0      A
06     12     64      8     12      c
07     24     24     24     24      n
08      4      0      4     88      T
09      0      0      0     96      T
10     96      0      0      0      A
11     96      0      0      0      A
12      0     96      0      0      C
13     24     24     24     24      n
14     84      8      0      4      A
Type: Heterodimer
Binding TFs: 6ryl_A (Homeobox domain)
6ryl_B / 6ryl_C (Homeobox domain)
Binding Sites: 6ryl_F
6ryl_G
			
Publications: Sloan J, Hakenjos JP, Gebert M, Ermakova O, Gumiero A, Stier G, Wild K, Sinning I, Lohmann JU. Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun 11:2223 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.