DNA Binding Motif

						

			
Accessions: 3pvp_B (3D-footprint 20231221)

			
Names: Chromosomal replication initiator protein dnaA
Organisms: Mycobacterium tuberculosis, strain ATCC 25177 / H37Ra
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA
Length: 9
Consensus: TTATCCACA
Weblogo: 
PSSM: P0      A      C      G      T
01     10      7      5     74      T
02     11      0      5     80      T
03     80      5      6      5      A
04      5      5      6     80      T
05      0     91      0      5      C
06      0     91      0      5      C
07     80      6      5      5      A
08      0     96      0      0      C
09     96      0      0      0      A
Binding TFs: 3pvp_B (Bacterial dnaA protein helix-turn-helix)
Binding Sites: 3pvp_E
3pvp_F
			
Publications: Tsodikov O.V, Biswas T. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. Journal of molecular biology 410:461-76 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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