DNA Binding Motif

						

			
Accessions: UN0048.1 (JASPAR 2024), MA2079.1 (JASPAR 2024)

			
Names: PK19717.1
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 9
Consensus: GGGsCCCmC
Weblogo: 
PSSM: P0      A      C      G      T
01    100    115    712     72      G
02      6      8    955     29      G
03     49     34    893     22      G
04    116    401    401     81      s
05     23    929      2     44      C
06      8    982      4      4      C
07     21    930      2     46      C
08    553    313     72     60      m
09      0    882     36     80      C
			
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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