DNA Binding Motif

						

			
Accessions: VSX2_methyl_2 (HT-SELEX2 May2017)

			
Names: VSX2
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: ctcrTTAw
Weblogo: 
PSSM: P0      A      C      G      T
01    687   1264    662    780      c
02    709    111    884   2045      t
03    549   2045    376    204      c
04   1996      0   2045      0      r
05     11    307     28   2045      T
06    159    133      0   2045      T
07   2045      0      0      0      A
08    600    404    492    549      w
Binding TFs: VSX2 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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