DNA Binding Motif

						

			
Accessions: MA1178.2 (JASPAR 2024)

			
Names: MYB3R1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 13
Consensus: wwcTAACGGTcaw
Weblogo: 
PSSM: P0      A      C      G      T
01   1259    682    474   1142      w
02    999    634    511   1413      w
03    761   1321    593    882      c
04    299    745     70   2443      T
05   3492     10     24     31      A
06   3524      9     10     14      A
07     19   3491      9     38      C
08     47     58   3410     42      G
09     64     18   3254    221      G
10    169    193     62   3133      T
11    694   1927    146    790      c
12   1795    473    582    707      a
13   1266    656    515   1120      w
Type: Heterodimer
Binding TFs: Q9S7G7 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9S7G7
Binding Sites: MA1178.2.3
MA1178.2.14
MA1178.2.1
MA1178.2.10
MA1178.2.11
MA1178.2.12 / MA1178.2.20
MA1178.2.13
MA1178.2.15
MA1178.2.16
MA1178.2.17
MA1178.2.18
MA1178.2.19
MA1178.2.2
MA1178.2.4
MA1178.2.5
MA1178.2.6
MA1178.2.7
MA1178.2.8
MA1178.2.9
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.