DNA Binding Motif
| Accessions: | 1p47_AB (3D-footprint 20231221) |
| Names: | Early growth response protein 1 |
| Organisms: | Mus musculus |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal Structure of tandem Zif268 molecules complexed to DNA |
| Length: | 20 |
| Consensus: | GGCGTGGGCGGCGTGGGCGT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 5 6 80 5 G 02 0 0 96 0 G 03 0 90 1 5 C 04 0 0 96 0 G 05 6 5 5 80 T 06 0 0 96 0 G 07 0 0 96 0 G 08 0 0 96 0 G 09 0 96 0 0 C 10 0 0 96 0 G 11 0 0 96 0 G 12 5 80 5 6 C 13 0 0 96 0 G 14 5 0 6 85 T 15 0 0 96 0 G 16 0 0 96 0 G 17 0 0 96 0 G 18 6 80 5 5 C 19 0 0 96 0 G 20 5 5 6 80 T |
| Type: | Heterodimer |
| Binding TFs: | 1p47_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) 1p47_B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | 1p47_C 1p47_D |
| Publications: | Peisach E, Pabo C.O. Constraints for zinc finger linker design as inferred from X-ray crystal structure of tandem Zif268-DNA complexes. Journal of molecular biology 330:1-7 (2003). [Pubmed] |
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