DNA Binding Motif

						

			
Accessions: MA0148.3 (JASPAR 2024)

			
Names: FOXA1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: tycwTRTTTACwywg
Weblogo: 
PSSM: P0      A      C      G      T
01   4328   4827   4124   8729      t
02   4659   6851   4731   5767      y
03   3062   8558   5314   5074      c
04   7135   4317   3641   6915      w
05     70      0     12  21926      T
06   5883      0  16125      0      R
07      0      0      0  22008      T
08      0      0   1292  20716      T
09      0      0   2859  19149      T
10  18252      0   3756      0      A
11      0  20556      0   1452      C
12   9193   2655      0  10160      w
13    827   7296   1392  12493      y
14  10702      1     63  11242      w
15   4807   2603   9415   5183      g
Type: Heterodimer
Binding TFs: P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
P55317
Binding Sites: MA0148.3.1
MA0148.3.10
MA0148.3.11
MA0148.3.12
MA0148.3.13
MA0148.3.14
MA0148.3.15
MA0148.3.16
MA0148.3.17
MA0148.3.18
MA0148.3.19
MA0148.3.2 / MA0148.3.3
MA0148.3.20
MA0148.3.4
MA0148.3.5
MA0148.3.6
MA0148.3.7
MA0148.3.8
MA0148.3.9
			
Publications: Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.