DNA Binding Motif

						

			
Accessions: 1h9t_AB (3D-footprint 20231221)

			
Names: FATTY ACID METABOLISM REGULATOR PROTEIN
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM E. COLI IN COMPLEX WITH FADB OPERATOR
Length: 11
Consensus: TGGTnCgACCA
Weblogo: 
PSSM: P0      A      C      G      T
01     10     10     10     66      T
02      0      0     96      0      G
03      0      0     96      0      G
04      5     10     10     71      T
05     24     24     24     24      n
06      0     96      0      0      C
07     12     10     58     16      g
08     85      0     10      1      A
09      0     96      0      0      C
10      0     96      0      0      C
11     80      5      6      5      A
Type: Heterodimer
Binding TFs: 1h9t_A (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
1h9t_B (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
Binding Sites: 1h9t_X
1h9t_Y
			
Publications: van Aalten D.M, DiRusso C.C, Knudsen J. The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR. The EMBO journal 20:2041-50 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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