DNA Binding Motif

						

			
Accessions: 3s8q_A (3D-footprint 20231221)

			
Names: R-M CONTROLLER PROTEIN
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the R-M controller protein C.Esp1396I OL operator complex
Length: 9
Consensus: TGTGACnta
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      8      8      8     72      T
04      0      0     96      0      G
05     96      0      0      0      A
06      0     96      0      0      C
07     24     24     24     24      n
08     16     16      8     56      t
09     56      8     16     16      a
Binding TFs: 3s8q_A (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 3s8q_C
3s8q_D
			
Publications: McGeehan J.E, Ball N.J, Streeter S.D, Thresh S.J, Kneale G.G. Recognition of dual symmetry by the controller protein C.Esp1396I based on the structure of the transcriptional activation complex. Nucleic acids research 40:4158-67 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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