DNA Binding Motif
| Accessions: | MA1691.1 (JASPAR 2024) |
| Names: | ARF27 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | smrGCAGACATga |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1524 2266 1789 1251 s 02 1928 2049 1322 1531 m 03 2684 860 1857 1429 r 04 700 671 4962 497 G 05 173 6134 279 244 C 06 5932 635 115 148 A 07 163 93 6412 162 G 08 6497 133 160 40 A 09 92 6539 89 110 C 10 6652 76 55 47 A 11 782 467 596 4985 T 12 1645 1498 2355 1332 g 13 1969 1600 1667 1594 a |
| Type: | Heterodimer |
| Binding TFs: | D9HNV4 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) D9HNV4 |
| Binding Sites: | MA1691.1.1 MA1691.1.10 MA1691.1.11 MA1691.1.12 MA1691.1.13 MA1691.1.14 MA1691.1.15 MA1691.1.16 MA1691.1.17 MA1691.1.18 MA1691.1.19 / MA1691.1.6 MA1691.1.2 MA1691.1.20 MA1691.1.3 MA1691.1.4 MA1691.1.5 MA1691.1.6 MA1691.1.3 / MA1691.1.7 MA1691.1.4 / MA1691.1.8 MA1691.1.5 / MA1691.1.9 MA1691.1.10 MA1691.1.11 MA1691.1.12 MA1691.1.13 MA1691.1.14 MA1691.1.15 MA1691.1.16 MA1691.1.17 MA1691.1.18 MA1691.1.19 MA1691.1.20 MA1691.1.7 MA1691.1.8 MA1691.1.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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