DNA Binding Motif

						

			
Accessions: PAX9_2 (HT-SELEX2 May2017)

			
Names: PAX9
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: ysGTCACGswysrsygv
Weblogo: 
PSSM: P0      A      C      G      T
01    649   1281    723    917      y
02    458   2380   1190    609      s
03     82     39   3570    515      G
04    836    420     61   3570      T
05    124   3570     26   1207      C
06   3570     40    185    141      A
07     43   3570     13    954      C
08    125     26   3570      0      G
09     20   3570   1713     14      s
10   1810    696    402   1760      w
11    219   1751     16   3570      y
12     57   1464   2106     54      s
13   3570    161   1883     19      r
14    718   1201    955    695      s
15    255   1364    220   2206      y
16   1097    100   3570   1395      g
17   1031   1587    933     20      v
Binding TFs: PAX9 ('Paired box' domain, Homeodomain-like domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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