DNA Binding Motif
| Accessions: | Ubx (DrosophilaTF 1.1) |
| Names: | Ubx |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 19 |
| Consensus: | kdrgrstTAATkGsytygk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.1481 0.1481 0.4444 0.2593 k 02 0.3 0.1667 0.2667 0.2667 d 03 0.2647 0.2059 0.4118 0.1176 r 04 0.1707 0.1707 0.4878 0.1707 g 05 0.2667 0.2 0.4 0.1333 r 06 0.1636 0.3273 0.2909 0.2182 s 07 0.1452 0.2097 0.129 0.5161 t 08 0.038 0 0 0.962 T 09 0.8605 0.0349 0.0349 0.0698 A 10 0.9659 0 0.0227 0.0114 A 11 0 0.0341 0.0341 0.9318 T 12 0.1081 0.0541 0.5541 0.2838 k 13 0.2203 0.0508 0.6949 0.0339 G 14 0.1579 0.4035 0.2982 0.1404 s 15 0.1111 0.3148 0.2037 0.3704 y 16 0.2292 0.2292 0.0833 0.4583 t 17 0.2195 0.3415 0.1707 0.2683 y 18 0.2 0.1667 0.5 0.1333 g 19 0.1667 0.125 0.2917 0.4167 k |
| Binding TFs: | Ubx (Homeobox domain) |
| Binding Sites: | Ubx_1 Ubx_2 Ubx_5 Ubx_10 Ubx_11 Ubx_12 Ubx_16 Ubx_20 Ubx_24 Ubx_27 Ubx_28 Ubx_31 Ubx_33 Ubx_36 Ubx_39 Ubx_40 Ubx_44 Ubx_49 Ubx_56 Ubx_58 Ubx_65 Ubx_70 Ubx_72 Ubx_75 Ubx_81 Ubx_86 Ubx_88 Ubx_13 Ubx_14 Ubx_15 Ubx_17 Ubx_18 Ubx_19 Ubx_21 Ubx_22 Ubx_23 Ubx_25 Ubx_26 Ubx_29 Ubx_3 Ubx_30 Ubx_32 Ubx_34 Ubx_35 Ubx_37 Ubx_38 Ubx_4 Ubx_41 Ubx_42 Ubx_43 Ubx_45 Ubx_46 Ubx_47 Ubx_48 Ubx_50 Ubx_51 Ubx_52 Ubx_53 Ubx_54 Ubx_55 Ubx_57 Ubx_59 Ubx_6 Ubx_60 Ubx_61 Ubx_62 / Ubx_63 Ubx_64 Ubx_66 Ubx_67 Ubx_68 Ubx_69 / Ubx_71 Ubx_7 Ubx_73 Ubx_74 Ubx_76 Ubx_77 Ubx_78 Ubx_79 Ubx_8 Ubx_80 Ubx_82 Ubx_83 Ubx_84 Ubx_85 Ubx_87 Ubx_9 |
| Publications: | Ekker S. C., Young K. E., von Kessler D. P., Beachy P. A. Optimal DNA sequence recognition by the Ultrabithorax homeodomain of Drosophila. EMBO J. 10:1179-1186 (1991). [Pubmed] |
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