DNA Binding Motif

						

			
Accessions: MA1929.1 (JASPAR 2024)

			
Names: CTCF
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 34
Consensus: cTGCagTkcchscwgyggCCasyAGrkGGCrsyv
Weblogo: 
PSSM: P0      A      C      G      T
01    905   3839   1235    787      c
02    914    405    319   5128      T
03    163    132   6252    219      G
04    287   5468    241    770      C
05   4559    627    390   1190      a
06   1658   1155   3322    631      g
07    592    986    571   4617      T
08   1133    777   1773   3083      k
09    720   3973    764   1309      c
10    775   3913    544   1534      c
11   2055   1851   1141   1719      h
12   1473   1915   2079   1299      s
13   1639   2308   1441   1378      c
14   1959   1412   1429   1966      w
15   1569   1431   2192   1574      g
16    827   2470    942   2527      y
17   1483   1392   2269   1622      g
18   1649    791   3152   1174      g
19    730   5068    518    450      C
20    224   6321     79    142      C
21   4283    357    935   1191      a
22    433   3551   2483    299      s
23   1251   2748    618   2149      y
24   5212    244    787    523      A
25    210    114   6387     55      G
26   2494     86   4085    101      r
27    495    254   3487   2530      k
28    232     76   6326    132      G
29    347    381   5406    632      G
30   1034   4715    246    771      C
31   2737    466   3084    479      r
32    702   3322   1980    762      s
33   1161   2317    807   2481      y
34   2275   1712   2015    764      v
Type: Heterodimer
Binding TFs: P49711 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P49711
Binding Sites: MA1929.1.1
MA1929.1.10
MA1929.1.11
MA1929.1.12
MA1929.1.13
MA1929.1.14
MA1929.1.15
MA1929.1.16
MA1929.1.17
MA1929.1.18
MA1929.1.19
MA1929.1.2
MA1929.1.20
MA1929.1.3
MA1929.1.4
MA1929.1.5
MA1929.1.6
MA1929.1.7
MA1929.1.8
MA1929.1.9
			
Publications: Soochit W, Sleutels F, Stik G, Bartkuhn M, Basu S, Hernandez SC, Merzouk S, Vidal E, Boers R, Boers J, van der Reijden M, Geverts B, van Cappellen WA, van den Hout M, Ozgur Z, van IJcken WFJ, Gribnau J, Renkawitz R, Graf T, Houtsmuller A, Grosveld F, Stadhouders R, Galjart N. CTCF chromatin residence time controls three-dimensional genome organization, gene expression and DNA methylation in pluripotent cells. Nat Cell Biol 23:881-893 (2021). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.