DNA Binding Motif

						

			
Accessions: NKX3-1_methyl_1 (HT-SELEX2 May2017)

			
Names: NKX3-1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: acCACTTAac
Weblogo: 
PSSM: P0      A      C      G      T
01   7718   4633   5001   4185      a
02   6228  21537   8490   2851      c
03    102  21537      4   2578      C
04  21537    135      0    679      A
05    350  21537     19      0      C
06      0     17     18  21537      T
07      0   2028      0  21537      T
08  21537   2040   1311   2779      A
09  21537   9438  12422   9944      a
10   3574   8473   5251   4238      c
Binding TFs: NKX3-1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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