DNA Binding Motif

						

			
Accessions: 4y60_C (3D-footprint 20231221)

			
Names: Transcription factor SOX-18
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of SOX18-HMG/PROX1-DNA
Length: 6
Consensus: ACAATg
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0     96      0      0      C
03     96      0      0      0      A
04     96      0      0      0      A
05      0     20      0     76      T
06     20     19     38     19      g
Binding TFs: 4y60_C (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 4y60_A
4y60_B
			
Publications: Klaus M, Prokoph N, Girbig M, Wang X, Huang YH, Srivastava Y, Hou L, Narasimhan K, Kolatkar PR, Francois M, Jauch R. Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction. Nucleic Acids Res 44:3922-35 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.