DNA Binding Motif

						

			
Accessions: 5k5h_A (3D-footprint 20231221)

			
Names: Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Homo sapiens CCCTC-binding factor (CTCF) ZnF4-7 and DNA complex structure
Length: 12
Consensus: CGCCCCCTGCcG
Weblogo: 
PSSM: P0      A      C      G      T
01     12     74      5      5      C
02      5      1     85      5      G
03      0     96      0      0      C
04      0     96      0      0      C
05      5     90      1      0      C
06      0     96      0      0      C
07      0     96      0      0      C
08      0      0      0     96      T
09      0      0     96      0      G
10     10     74      7      5      C
11      5     64      6     21      c
12      5     12     69     10      G
Binding TFs: 5k5h_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Binding Sites: 5k5h_B
5k5h_C
			
Publications: Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X. Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol Cell 66:711-720 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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