DNA Binding Motif

						

			
Accessions: 4lup_A (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor
Organisms: Escherichia coli
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the complex formed by region of E. coli sigmaE bound to its -10 element non template strand
Length: 7
Consensus: tGTCnaA
Weblogo: 
PSSM: P0      A      C      G      T
01     14     14     14     54      t
02      0      0     96      0      G
03      0      0      0     96      T
04      0     96      0      0      C
05     24     24     24     24      n
06     60     12     12     12      a
07     96      0      0      0      A
Binding TFs: 4lup_A (Sigma-70 region 2 )
Binding Sites: 4lup_B
			
Publications: Campagne S, Marsh M.E, Capitani G, Vorholt J.A, Allain F.H. Structural basis for -10 promoter element melting by environmentally induced sigma factors. Nature structural & molecular biology 21:269-76 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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