DNA Binding Motif

						

			
Accessions: 1p47_B (3D-footprint 20231221)

			
Names: Early growth response protein 1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of tandem Zif268 molecules complexed to DNA
Length: 11
Consensus: gGCGTGGGCGT
Weblogo: 
PSSM: P0      A      C      G      T
01     16     16     48     16      g
02      0      0     96      0      G
03      0     80     16      0      C
04      0      0     96      0      G
05      0      0     16     80      T
06      0      0     96      0      G
07      0      0     96      0      G
08      0      0     96      0      G
09      0     96      0      0      C
10      0      0     96      0      G
11      0      0      0     96      T
Binding TFs: 1p47_B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1p47_C
1p47_D
			
Publications: Peisach E, Pabo C.O. Constraints for zinc finger linker design as inferred from X-ray crystal structure of tandem Zif268-DNA complexes. Journal of molecular biology 330:1-7 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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