DNA Binding Motif
| Accessions: | MA1694.1 (JASPAR 2024) |
| Names: | ARF35 |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 14 |
| Consensus: | vcacCCGACAagrh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1326 1297 1351 1048 v 02 1011 1549 1219 1243 c 03 2144 1043 1014 821 a 04 744 2700 1101 477 c 05 250 4409 122 241 C 06 330 4521 117 54 C 07 37 15 4934 36 G 08 4934 16 58 14 A 09 7 4975 23 17 C 10 4709 253 39 21 A 11 3063 556 856 547 a 12 955 905 2699 463 g 13 1548 1161 1382 931 r 14 1377 1285 935 1425 h |
| Binding Sites: | MA1694.1.1 MA1694.1.10 MA1694.1.11 / MA1694.1.7 MA1694.1.12 MA1694.1.13 MA1694.1.14 MA1694.1.15 / MA1694.1.8 MA1694.1.16 / MA1694.1.9 MA1694.1.10 / MA1694.1.17 MA1694.1.11 / MA1694.1.18 MA1694.1.19 MA1694.1.2 MA1694.1.12 / MA1694.1.20 MA1694.1.3 MA1694.1.4 MA1694.1.4 / MA1694.1.5 MA1694.1.6 MA1694.1.7 MA1694.1.8 MA1694.1.6 / MA1694.1.9 MA1694.1.13 MA1694.1.14 MA1694.1.15 MA1694.1.16 MA1694.1.17 MA1694.1.18 MA1694.1.19 MA1694.1.20 MA1694.1.5 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.