DNA Binding Motif
| Accessions: | MA1102.2 (JASPAR 2024) |
| Names: | CTCFL |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 12 |
| Consensus: | rsCAGGGGGCgs |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 5825 4180 4844 3188 r 02 2659 7033 7094 1251 s 03 1301 12867 2033 1836 C 04 17270 413 329 25 A 05 86 481 17285 185 G 06 684 600 16511 242 G 07 349 1141 15425 1122 G 08 193 767 16819 258 G 09 351 270 17001 415 G 10 181 17593 68 195 C 11 4166 3015 9299 1557 g 12 1771 7727 6341 2198 s |
| Type: | Heterodimer |
| Binding TFs: | Q8NI51 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) Q8NI51 |
| Binding Sites: | MA1102.2.1 / MA1102.2.2 MA1102.2.10 / MA1102.2.5 MA1102.2.11 / MA1102.2.7 MA1102.2.12 / MA1102.2.8 MA1102.2.13 / MA1102.2.9 MA1102.2.10 / MA1102.2.14 MA1102.2.15 MA1102.2.11 / MA1102.2.16 MA1102.2.12 / MA1102.2.17 MA1102.2.13 / MA1102.2.18 MA1102.2.19 MA1102.2.20 MA1102.2.3 / MA1102.2.6 / MA1102.2.7 MA1102.2.3 / MA1102.2.4 MA1102.2.5 MA1102.2.8 MA1102.2.4 / MA1102.2.9 MA1102.2.14 MA1102.2.15 MA1102.2.16 MA1102.2.17 MA1102.2.18 MA1102.2.19 MA1102.2.20 MA1102.2.6 |
| Publications: | Pugacheva EM, Rivero-Hinojosa S, Espinoza CA, Méndez-Catalá CF, Kang S, Suzuki T, Kosaka-Suzuki N, Robinson S, Nagarajan V, Ye Z, Boukaba A, Rasko JE, Strunnikov AV, Loukinov D, Ren B, Lobanenkov VV. Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions. Genome Biol : (2015). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.