DNA Binding Motif

						

			
Accessions: 5trd_B (3D-footprint 20231221)

			
Names: Riboflavin kinase
Organisms: strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165, Thermoplasma acidophilum
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
Length: 6
Consensus: TAGTAA
Weblogo: 
PSSM: P0      A      C      G      T
01     11      9      9     67      T
02     96      0      0      0      A
03      0      0     96      0      G
04      0      0      0     96      T
05     67      9     11      9      A
06     67     11      9      9      A
Binding TFs: 5trd_B (MarR family, Domain of unknown function DUF120, Winged helix DNA-binding domain)
Binding Sites: 5trd_G
5trd_H
			
	
			


			

				

				
				
				
				

			

			

		

	
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