DNA Binding Motif

						

			
Accessions: 3g9j_AB (3D-footprint 20231221)

			
Names: Glucocorticoid receptor
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: GR DNA binding domain:Pal, 18bp complex-36
Length: 15
Consensus: CaGnACAnnnTGtnC
Weblogo: 
PSSM: P0      A      C      G      T
01      6     72      6     12      C
02     60     12     12     12      a
03      0      0     96      0      G
04     24     24     24     24      n
05     96      0      0      0      A
06      0     96      0      0      C
07     84      6      6      0      A
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0      0      0     96      T
12      0      0     96      0      G
13     18     12     12     54      t
14     24     24     24     24      n
15      0     96      0      0      C
Type: Heterodimer
Binding TFs: 3g9j_A (Zinc finger, C4 type (two domains))
3g9j_B (Zinc finger, C4 type (two domains))
Binding Sites: 3g9j_C
3g9j_D
			
Publications: Meijsing S.H, Pufall M.A, So A.Y, Bates D.L, Chen L, Yamamoto K.R. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science (New York, N.Y.) 324:407-10 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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