DNA Binding Motif

						

			
Accessions: RARG_DBD_2 (HumanTF 1.0)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 18
Consensus: rAGGTCAhcyarAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   1713    183   1110    184      r
02   2426     79    537      3      A
03      2      0   2594      4      G
04      1      0   2550    134      G
05      4     11     31   2865      T
06      2   3933     16     12      C
07   3292      5     19      1      A
08   1077    855    226    799      h
09    642   1375    693    289      c
10    591   1031    250   1168      y
11   2603    378    290    898      a
12   1699    449   1241    119      r
13   2919    111    624      3      A
14      1      0   2587      3      G
15      1      0   2461    273      G
16     12     12     17   2774      T
17      3   3928     15     20      C
18   3411      2     20      0      A
Binding TFs: RARG_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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