DNA Binding Motif

						

			
Accessions: 6r2v_A (3D-footprint 20231221)

			
Names: Nuclear transcription factor Y subunit A-6
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Arabidopsis NF-Y/CCAAT-box complex
Length: 7
Consensus: CCAATcc
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0     96      0      0      C
03     96      0      0      0      A
04     96      0      0      0      A
05      0      0      0     96      T
06     13     54     13     16      c
07     13     54     16     13      c
Binding TFs: 6r2v_A (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B)
Binding Sites: 6r2v_I
6r2v_J
			
Publications: Chaves-Sanjuan A, Gnesutta N, Gobbini A, Martignago D, Bernardini A, Fornara F, Mantovani R, Nardini M. Structural determinants for NF-Y subunit organization and NF-Y/DNA association in plants. Plant J : (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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