DNA Binding Motif
| Accessions: | MA2437.1 (JASPAR 2024) |
| Names: | SPL19B |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | GCGGTAsTACCGC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9037 4640 50959 2337 G 02 7006 52557 1424 5986 C 03 3207 1501 61329 936 G 04 733 1083 64661 496 G 05 871 1212 325 64565 T 06 64778 723 648 824 A 07 303 43745 22560 365 s 08 1537 780 685 63971 T 09 63129 569 2364 911 A 10 798 64378 954 843 C 11 1020 60980 1564 3409 C 12 4167 504 60997 1305 G 13 1123 56847 1704 7299 C |
| Binding Sites: | MA2437.1.4 MA2437.1.19 / MA2437.1.9 MA2437.1.10 / MA2437.1.18 MA2437.1.1 MA2437.1.11 MA2437.1.12 MA2437.1.13 MA2437.1.14 MA2437.1.15 MA2437.1.16 / MA2437.1.20 / MA2437.1.6 MA2437.1.17 / MA2437.1.7 MA2437.1.2 MA2437.1.3 MA2437.1.5 MA2437.1.8 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.