DNA Binding Motif

						

			
Accessions: MA0376.1 (JASPAR 2024)

			
Names: RTG3
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 20
Consensus: rkmkkakCACGTGmyyrvwc
Weblogo: 
PSSM: P0      A      C      G      T
01    393    145    330    130      r
02    220    147    267    364      k
03    357    322    207    112      m
04    164    176    295    363      k
05    156    121    250    472      k
06    534    113    203    148      a
07     34     27    662    275      k
08     19    953     19      7      C
09    905      5     81      7      A
10      5    949     16     28      C
11     28     16    949      5      G
12      7     81      5    905      T
13      7     19    953     19      G
14    275    662     27     34      m
15    152    332    156    358      y
16    111    270    187    430      y
17    398    122    276    202      r
18    275    257    296    171      v
19    323    165     33    477      w
20    249    396    108    245      c
Type: Heterodimer
Binding TFs: P38165 (Helix-loop-helix DNA-binding domain)
P38165
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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