DNA Binding Motif

Accessions: UP00583A_1 (UniPROBE 20160601)
Names: TGME49_306620, TGME49_306620 AP2IX-9
Organisms: Toxoplasma gondii
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: wchCAGTGymasrs
Weblogo:
PSSM: P0 A C G T
01 0.27 0.10 0.22 0.42 w
02 0.23 0.45 0.13 0.20 c
03 0.28 0.32 0.11 0.29 h
04 0.04 0.93 0.01 0.03 C
05 0.99 0 0.01 0 A
06 0 0.02 0.97 0 G
07 0.14 0.08 0 0.77 T
08 0 0 0.99 0 G
09 0 0.38 0 0.61 y
10 0.50 0.32 0.05 0.14 m
11 0.55 0.12 0.15 0.18 a
12 0.13 0.53 0.28 0.07 s
13 0.27 0.13 0.48 0.12 r
14 0.11 0.31 0.47 0.11 s
Binding TFs: UP00583A (AP2 domain)
Binding Sites: AGTGCACT
GCAGTGCA
ACACTGGA
ACACTGTG
ACAGTGTA
AGTGCAAT
ATACACTG
CAGAGCAA
CAGTGCAA
CAGTGCAC
CAGTGCAG
CAGTGCTA
CAGTGTAA
CAGTGTAC
CAGTGTAG
CAGTGTCA
CAGTGTTA
CCAGTGTA
TACACTGA
TCAGTGCA
Publications: Radke JB, Lucas O, De Silva EK, Ma Y, Sullivan WJ Jr, Weiss LM, Llinas M, White MW. ApiAP2 transcription factor restricts development of the Toxoplasma tissue cyst. Proc Natl Acad Sci U S A 110:6871-6 (2013). [Pubmed]

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