DNA Binding Motif

						

			
Accessions: UP00629A_1 (UniPROBE 20160601)

			
Names: zinc finger protein 200, ZNF200_REF_R1, ZNFMF
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: sswkkwaadGGAKACmmwswsrw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.15   0.28   0.43   0.14      s
02   0.16   0.32   0.32   0.19      s
03   0.33   0.21   0.15   0.31      w
04   0.22   0.15   0.34   0.30      k
05   0.21   0.16   0.27   0.36      k
06   0.38   0.14   0.19   0.29      w
07   0.60   0.04   0.19   0.17      a
08   0.54   0.13   0.19   0.14      a
09   0.28   0.09   0.36   0.26      d
10   0.03   0.01   0.96   0.01      G
11   0.05      0   0.95      0      G
12   0.98      0   0.02      0      A
13   0.01      0   0.74   0.25      K
14   0.98   0.01      0   0.01      A
15      0   0.90   0.01   0.09      C
16   0.36   0.53   0.01   0.11      m
17   0.29   0.38   0.09   0.25      m
18   0.32   0.23   0.18   0.27      w
19   0.25   0.29   0.34   0.13      s
20   0.26   0.20   0.22   0.32      w
21   0.21   0.27   0.37   0.15      s
22   0.29   0.20   0.27   0.24      r
23   0.51   0.13   0.07   0.29      w
Binding TFs: UP00629A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: GATATCCC
GGATATCA
AAGGAGAC
AGGAGACC
AGGATACC
AGGGAGAC
AGGGATAT
GGAGACAA
GGAGACCA
GGAGACCC
GGATACCA
GGATACCC
GGATACTA
GGATATCC
GGGAGACA
GGGAGACC
GGGATACC
GGGGAGAC
GGGGATAC
GGTCTCCA
			
Publications: Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.