DNA Binding Motif
| Accessions: | MA1344.1 (JASPAR 2024), M0220 (AthalianaCistrome v4_May2016) |
| Names: | bZIP28, bZIP28.DAP, T14739; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | dwwgrtsACGTGKCa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 177 65 147 159 d 02 172 108 103 165 w 03 138 90 91 229 w 04 125 39 254 130 g 05 249 69 174 56 r 06 127 79 3 339 t 07 1 181 315 51 s 08 546 0 2 0 A 09 0 544 0 4 C 10 4 0 544 0 G 11 0 0 0 548 T 12 6 0 542 0 G 13 0 0 407 141 K 14 89 431 1 27 C 15 302 42 118 86 a |
| Type: | Heterodimer |
| Binding TFs: | Q9SG86 / T14739 (bZIP transcription factor, Basic region leucine zipper) Q9SG86 |
| Binding Sites: | MA1344.1.10 MA1344.1.11 / MA1344.1.4 MA1344.1.3 MA1344.1.7 MA1344.1.5 MA1344.1.1 MA1344.1.12 MA1344.1.13 / MA1344.1.19 MA1344.1.14 MA1344.1.15 MA1344.1.16 MA1344.1.17 MA1344.1.18 MA1344.1.2 MA1344.1.20 MA1344.1.6 MA1344.1.8 MA1344.1.9 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.