DNA Binding Motif

						

			
Accessions: PRDM1_HUMAN.H10MO.C|M01462 (HOCOMOCO 10)

			
Names: PRDM1
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: More than 3 adjacent zinc finger factors{2.3.3}; PRDM1-like factors{2.3.3.12}
Length: 14
Consensus: raAAGtGAAAGTga
Weblogo: 
PSSM: P0      A      C      G      T
01    183     37    225     53      r
02    316     48     72     62      a
03    359     58     50     31      A
04    440      1     50      7      A
05     34      3    450     11      G
06     84     12     81    321      t
07     16      2    479      1      G
08    494      1      1      2      A
09    477      0     20      1      A
10    486      1      4      7      A
11     11      6    469     12      G
12      8     38     24    428      T
13    114     37    240    107      g
14    216    100     87     95      a
Binding TFs: PRDM1_HUMAN (Zinc finger, C2H2 type, SET domain, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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