DNA Binding Motif

						

			
Accessions: MA0901.3 (JASPAR 2024)

			
Names: HOXB13
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 9
Consensus: cCAATAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01  11896  47674   9096  10048      c
02   4212  65312    582   8608      C
03  66409   4611    351   7343      A
04  73044    726   1913   3031      A
05    421    550    586  77157      T
06  73612    523   1083   3496      A
07  75997    599    490   1628      A
08  76077    760    625   1252      A
09  70230   2465   1882   4137      A
Type: Heterodimer
Binding TFs: Q92826 (Homeobox domain, Hox protein A13 N terminal)
Q92826
Binding Sites: MA0901.3.1 / MA0901.3.15 / MA0901.3.17 / MA0901.3.9
MA0901.3.10 / MA0901.3.19
MA0901.3.11 / MA0901.3.12 / MA0901.3.5
MA0901.3.13 / MA0901.3.14 / MA0901.3.20 / MA0901.3.7
MA0901.3.16
MA0901.3.18
MA0901.3.2
MA0901.3.3 / MA0901.3.4
MA0901.3.6
MA0901.3.8
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.