DNA Binding Motif

						

			
Accessions: 1llm_CD (3D-footprint 20231221)

			
Names: chimera of Zif23-GCN4
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA
Length: 12
Consensus: cCCACGCGtGGG
Weblogo: 
PSSM: P0      A      C      G      T
01     16     54     13     13      c
02      0     96      0      0      C
03      0     96      0      0      C
04     96      0      0      0      A
05      0     96      0      0      C
06      0      0     96      0      G
07      0     96      0      0      C
08      0      0     96      0      G
09     16     13     13     54      t
10      0      0     96      0      G
11      0      0     96      0      G
12      0      0     96      0      G
Type: Heterodimer
Binding TFs: 1llm_C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
1llm_D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1llm_A / 1llm_B
			
Publications: Wolfe S.A, Grant R.A, Pabo C.O. Structure of a designed dimeric zinc finger protein bound to DNA. Biochemistry 42:13401-9 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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