DNA Binding Motif

						

			
Accessions: MA0577.3 (JASPAR 2024)

			
Names: SPL3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 11
Consensus: yyGTACGGAya
Weblogo: 
PSSM: P0      A      C      G      T
01    200    288    143    319      y
02    108    241     85    516      y
03     11      6    928      5      G
04      2      3     10    935      T
05    942      3      3      2      A
06      7    939      1      3      C
07     75      6    856     13      G
08     34      5    872     39      G
09    760     56     15    119      A
10    237    275    122    316      y
11    340    171    226    213      a
Type: Heterodimer
Binding TFs: P93015 (SBP domain)
P93015
Binding Sites: MA0577.3.1
MA0577.3.10
MA0577.3.11
MA0577.3.12
MA0577.3.13
MA0577.3.14
MA0577.3.15
MA0577.3.16
MA0577.3.17
MA0577.3.18
MA0577.3.19
MA0577.3.2
MA0577.3.20
MA0577.3.3
MA0577.3.4 / MA0577.3.9
MA0577.3.5
MA0577.3.6
MA0577.3.7
MA0577.3.8
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.