DNA Binding Motif

						

			
Accessions: 6chv_GH (3D-footprint 20231221)

			
Names: Antitoxin HigA
Organisms: Proteus vulgaris
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Proteus vulgaris HigA antitoxin bound to DNA
Length: 16
Consensus: TACAnnnnnTGTaanA
Weblogo: 
PSSM: P0      A      C      G      T
01      5     11      5     75      T
02     76      5     10      5      A
03      0     96      0      0      C
04     96      0      0      0      A
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      0      0      0     96      T
11      0      0     96      0      G
12      0      0      0     96      T
13     61     10     10     15      a
14     65     11     10     10      a
15     24     24     24     24      n
16     85      0      5      6      A
Type: Heterodimer
Binding TFs: 6chv_G (Helix-turn-helix)
6chv_H (Helix-turn-helix)
Binding Sites: 6chv_K
6chv_L
			
Publications: Schureck MA, Meisner J, Hoffer ED, Wang D, Onuoha N, Ei Cho S, Lollar P 3rd, Dunham CM. Structural basis of transcriptional regulation by the HigA antitoxin. Mol Microbiol 111:1449-1462 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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