DNA Binding Motif

						

			
Accessions: 1mdm_AB (3D-footprint 20231221)

			
Names: PAIRED BOX PROTEIN PAX-5
Organisms: Homo sapiens, Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA
Length: 19
Consensus: CCAnGnnnnCnnnTCTCCG
Weblogo: 
PSSM: P0      A      C      G      T
01      1     90      0      5      C
02     11     67     13      5      C
03     84      5      0      7      A
04     24     24     24     24      n
05      5     11     73      7      G
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      5     81      5      5      C
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14      5      5      5     81      T
15      0     96      0      0      C
16      0      0      0     96      T
17      0     96      0      0      C
18      0     96      0      0      C
19      0      0     96      0      G
Type: Heterodimer
Binding TFs: 1mdm_A ('Paired box' domain)
1mdm_B (Ets-domain)
Binding Sites: 1mdm_C
1mdm_D
			
Publications: Garvie C.W, Pufall M.A, Graves B.J, Wolberger C. Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships. The Journal of biological chemistry 277:45529-36 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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