DNA Binding Motif

						

			
Accessions: MA2045.2 (JASPAR 2024)

			
Names: NAC031
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 19
Consensus: TTrCkTGTawhACAAGtwA
Weblogo: 
PSSM: P0      A      C      G      T
01     69      5     10    829      T
02    173     18     95    627      T
03    261     64    449    139      r
04     18    882      3     10      C
05      1      4    599    309      k
06      0      2      2    909      T
07    115     56    734      8      G
08    119     95     40    659      T
09    406    112    188    207      a
10    274    200    193    246      w
11    245    298    138    232      h
12    635     44     99    135      A
13     34    665    105    109      C
14    883      7      4     19      A
15    750    145     10      8      A
16     11      1    880     21      G
17    153    146     96    518      t
18    382    120     23    388      w
19    748     19     13    133      A
Type: Heterodimer
Binding TFs: Q9S851 (No apical meristem (NAM) protein)
Q9S851
Binding Sites: MA2045.2.1
MA2045.2.11
MA2045.2.14
MA2045.2.15
MA2045.2.3
MA2045.2.4
MA2045.2.6
MA2045.2.8
MA2045.2.2
MA2045.2.19
MA2045.2.20
MA2045.2.5
MA2045.2.7
MA2045.2.12
MA2045.2.13
MA2045.2.10
MA2045.2.16
MA2045.2.17
MA2045.2.18
MA2045.2.9
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.