DNA Binding Motif

						

			
Accessions: PIF3(1) (Athamap 20091028)

			
Names: PIF3(1)
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]
Length: 18
Consensus: gkrggmCACGTGrmswCk
Weblogo: 
PSSM: P0      A      C      G      T
01      2      5     15      5      g
02      5      1     10     11      k
03     11      2     12      2      r
04      6      0     17      4      g
05      5      3     17      2      g
06     11     11      5      0      m
07      0     27      0      0      C
08     27      0      0      0      A
09      0     27      0      0      C
10      0      0     27      0      G
11      0      0      0     27      T
12      0      0     27      0      G
13     11      2     13      1      r
14      9     12      6      0      m
15      3      9     13      2      s
16     11      6      0     10      w
17      4     19      4      0      C
18      4      2      9     12      k
Binding TFs: PIF3 (Helix-loop-helix DNA-binding domain)
			
Publications: Martinez-Garcia J. F., Huq E., Quail P. H. Direct targeting of light signals to a promoter element-bound transcription factor. Science 288:859-863 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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