DNA Binding Motif

						

			
Accessions: M0473 (AthalianaCistrome v4_May2016)

			
Names: LOB.DAP, T23730;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: tCCkCCGccdyckCCGCCGcm
Weblogo: 
PSSM: P0      A      C      G      T
01    138     50    127    258      t
02     44    407     28     94      C
03     34    473      1     65      C
04     81     17    321    154      k
05      5    492     55     21      C
06     15    557      1      0      C
07     53      3    398    119      G
08     16    386     57    114      c
09    121    316     31    105      c
10    154      6    213    200      d
11     63    288     36    186      y
12     86    351      3    133      c
13     84     45    202    242      k
14     56    446     20     51      C
15     26    526      2     19      C
16     13      0    507     53      G
17      5    428    115     25      C
18     42    471      7     53      C
19     61      4    452     56      G
20     46    296    114    117      c
21    157    229     72    115      m
Binding TFs: T23730 (Protein of unknown function DUF260)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.