DNA Binding Motif
| Accessions: | 4ihv_AB (3D-footprint 20231221) |
| Names: | DNA-binding protein fis |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of Fis bound to 27 bp sequence DNA F28 (AAATTTGTTTGAGCGTTGAGCAAATTT) |
| Length: | 17 |
| Consensus: | TGtnTGnnnnnTrnnCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 3 5 3 85 T 02 0 0 96 0 G 03 10 10 15 61 t 04 24 24 24 24 n 05 3 13 3 77 T 06 5 3 85 3 G 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 24 24 24 24 n 12 5 3 3 85 T 13 60 3 30 3 r 14 24 24 24 24 n 15 24 24 24 24 n 16 0 96 0 0 C 17 85 5 3 3 A |
| Type: | Heterodimer |
| Binding TFs: | 4ihv_A (Bacterial regulatory protein, Fis family) 4ihv_B (Bacterial regulatory protein, Fis family) |
| Binding Sites: | 4ihv_C 4ihv_D |
| Publications: | Hancock S.P, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson R.C. Control of DNA minor groove width and Fis protein binding by the purine 2-amino group. Nucleic acids research 41:6750-60 (2013). [Pubmed] |
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