DNA Binding Motif

						

			
Accessions: VSX1_methyl_4 (HT-SELEX2 May2017)

			
Names: VSX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: cYAATTAv
Weblogo: 
PSSM: P0      A      C      G      T
01   2110  27115   5272   5483      c
02    756   8059    142  19056      Y
03  27115   1171    139    895      A
04  27115    474      0      0      A
05      0      0      0  27115      T
06    211   1192    769  27115      T
07  27115      0   1948   1364      A
08   6850   7156   7327   5782      v
Binding TFs: VSX1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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