DNA Binding Motif

						

			
Accessions: UP00398A_1 (UniPROBE 20160601)

			
Names: "DNA-binding protein RAP1, GRF1, N1310, Rap1, Repressor/activator site-binding protein, SBF-E, TBA1, TUF, TUF1, YNL216W"
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: yktwcrCCCgtACACCCcrdaam
Weblogo: 
PSSM: P0      A      C      G      T
01   0.18   0.29   0.09   0.44      y
02   0.16   0.16   0.26   0.42      k
03   0.19   0.07   0.22   0.52      t
04   0.38   0.21   0.04   0.37      w
05   0.21   0.53   0.09   0.17      c
06   0.56   0.03   0.27   0.14      r
07   0.05   0.87   0.02   0.06      C
08   0.02   0.96   0.01   0.01      C
09   0.03   0.94   0.01   0.02      C
10   0.24   0.15   0.46   0.15      g
11   0.11   0.08   0.13   0.67      t
12   0.94   0.02   0.03   0.01      A
13   0.01   0.97   0.01   0.01      C
14   0.92   0.07      0   0.01      A
15   0.01   0.92      0   0.07      C
16   0.02   0.97   0.01   0.01      C
17   0.09   0.80   0.02   0.08      C
18   0.11   0.61   0.17   0.11      c
19   0.29   0.20   0.28   0.22      r
20   0.33   0.14   0.28   0.26      d
21   0.39   0.24   0.19   0.17      a
22   0.45   0.17   0.19   0.19      a
23   0.26   0.33   0.24   0.16      m
Binding TFs: UP00398A (Myb-like DNA-binding domain, Rap1, DNA-binding, Rap1 - C terminal domain)
Binding Sites: AACACCCA
ACACCCAA
ACACCCAC
ACACCCAG
ACACCCAT
ACCCATAC
AGGGTGTA
CCCGTGCA
CGTACACC
CGTGCACC
GGATGTAC
GGGGTGTA
GGGTGCAC
GGGTGTAC
GGTACACC
GGTGCACC
GGTGTACA
GTACACCA
GTGCACCA
TACACCCA
			
Publications: Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.